Research Assistant or Postdoc for the Global Capacity Building Research Gro at Danmarks Tekniske Universitet

Kongens Lyngby, Capital Region of Denmark, Denmark -

Full Time

Start Date

Immediate

Expiry Date

19 May, 26

Salary

0.0

Posted On

18 Feb, 26

Experience

2 year(s) or above

Remote Job

Yes

Telecommute

Yes

Sponsor Visa

Skills

WGS Data Quality Control, Bacterial Whole Genome Sequencing, Bioinformatic Pipelines, AMR Analysis, Genomic Surveillance, Python, R, Bash, Unix/Linux Environment, HPC Clusters, Metagenomic Data Analysis, Machine Learning, Data Visualization, Statistical Analysis, Nextflow, Snakemake

Industry

Research Services

Description

Are you experienced in WGS data quality control and analysis from bacterial isolates? Do you have a strong interest in genomics and antimicrobial resistance (AMR)? The Research Group for Global Capacity Building (GloCaB) is looking for a dedicated bioinformatician to join our team. Antimicrobial resistance is one of the most pressing global health challenges, driving a silent pandemic that affects both human and animal health. Our group plays a key role as an EU, WHO, and FAO reference laboratory for antimicrobial resistance. We provide scientific advisory services, as well as applied and implementation research, to National Reference Laboratories, international organizations, and supranational institutions such as the European Commission and the European Food Safety Authority. Our work focuses on strengthening global capacity for phenotypic and genomic surveillance of antimicrobial resistance, including the development of proficiency tests, external quality assurance, and laboratory training programs. Responsibilities and qualifications As our new colleague, your primary responsibilities will include: Developing, maintaining, and extending bioinformatic pipelines, integrating data from multiple sequencing technologies. Analyze and evaluate WGS data to support research and capacity-building objectives, including participation in external quality assessments and genomic proficiency tests. Providing bioinformatics support for bacterial single-isolate genome and AMR analysis. Assist in organizing and delivering training (both in-person and online) on bioinformatics capacity-building activities for our international network. Organize data analysis, write reports and manuscripts, and create visualizations to summarize findings. Presenting results orally to a broad audience. Occasional travel may be required. Required qualifications: As a formal qualification, you must have a master’s degree or PhD degree (or equivalent) in engineering or equivalent within the area of bioinformatics, computational biology, or a related field. Proficiency in English (both oral and written) and good communication skills. Essential expertise: Strong knowledge of sequencing analysis pipelines for both short- and long-read technologies. Experience in bioinformatic WGS data analysis and interpretation from bacterial isolates for AMR surveillance and/or genomic epidemiology. Proficiency in relevant bioinformatics tools and programming languages (e.g., Python, R, Bash). Experience working in a Unix/Linux environment, including setting up and managing High Performance Computing (HPC) clusters. Familiarity with metagenomic data analysis and machine learning techniques Ability to support non-bioinformaticians and deliver training in WGS data analysis. Skills in data management, visualization, and statistical analysis. Proven ability to plan and execute complex tasks within set deadlines. Experience in authoring scientific manuscripts for peer-reviewed journals. Demonstrated ability to collaborate in large, international, and cross-disciplinary teams. Desirable expertise: Experience in developing pipelines for automating quality control and downstream analyses using workflow management systems (e.g., Nextflow, Snakemake). We offer DTU is a leading technical university globally recognized for the excellence of its research, education, innovation and scientific advice. We offer a rewarding and challenging job in an international environment. We strive for academic excellence in an environment characterized by collegial respect and academic freedom tempered by responsibility. Salary and terms of employment The appointment will be based on the collective agreement with the Confederation of Professional Associations. The allowance will be agreed upon with the relevant union. Based on your qualifications you will either be employed as Research Assistant or Postdoc. Your tasks will be adjusted accordingly. The period of employment is 1 year. Starting date is 1 April 2026 (or according to mutual agreement). The position is a full-time position. You can read more about career paths at DTU here. Further information Further information may be obtained from Project Manager, Christa Twyford Gibson on chrgi@dtu.dk You can read more about the Institute at www.food.dtu.dk/english/ and about the research group at www.food.dtu.dk/english/research/global-capacity-building. If you are applying from abroad, you may find useful information on working in Denmark and at DTU at DTU – Moving to Denmark. Application procedure Your complete online application must be submitted no later than 12 March 2026 (23:59 Danish time). Applications must be submitted as one PDF file containing all materials to be given consideration. To apply, please open the link "Apply now", fill out the online application form, and attach all your materials in English in one PDF file. The file must include: Application (cover letter) CV Academic Diplomas (MSc/PhD – in English) Applications received after the deadline will not be considered. All interested candidates irrespective of age, gender, disability, race, religion or ethnic background are encouraged to apply. As DTU works with research in critical technology, which is subject to special rules for security and export control, open-source background checks may be conducted on qualified candidates for the position. DTU National Food Institute DTU National Food Institute conducts research into and disseminates - through advice, innovation and teaching - sustainable and value-creating solutions in the area of food and health for the benefit of society. The vision is to make a difference by generating future prosperity through research into food and health. The institute works to prevent disease and promote health, develop new and better food products for a growing population and create sustainable technological solutions, including biosolutions. The institute’s tasks are carried out in interdisciplinary collaboration within e.g. nutrition, chemistry, toxicology, microbiology, epidemiology, modelling, and technology. This is achieved through a strong academic environment of international top class with correspondingly skilled researchers and employees. The Institute employs approximately 390 staff members. Technology for people DTU develops technology for people. With our international elite research and study programmes, we are helping to create a better world and to solve the global challenges formulated in the UN’s 17 Sustainable Development Goals. Hans Christian Ørsted founded DTU in 1829 with a clear mission to develop and create value using science and engineering to benefit society. That mission lives on today. DTU has 13,500 students and 6,000 employees. We work in an international atmosphere and have an inclusive, evolving, and informal working environment. DTU has campuses in all parts of Denmark and in Greenland, and we collaborate with the best universities around the world.

Responsibilities

Primary responsibilities include developing and maintaining bioinformatic pipelines, analyzing Whole Genome Sequencing (WGS) data for research and capacity-building, and providing bioinformatics support for bacterial AMR analysis. The role also involves organizing and delivering training, writing reports and manuscripts, and presenting findings orally.