MRC Investigator Scientist in Cardiac Image Analysis LMS 2473

at  Medical Research Council

Open Date
19/08/2024, 10:00
Close Date
15/09/2024, 23:55
Research Institute
MRC Laboratory of Medical Sciences
Research Institute / Unit Information
The LMS is a world-class research laboratory where scientists and clinicians collaborate to advance the understanding of biology and its application to medicine. Funded by the MRC as part of UK Research and Innovation, the LMS has a collaborative working culture and new state-of-the-art building based in the heart of West London in the Hammersmith Hospital Campus (W12).
The LMS aims to deliver transdisciplinary team science, in synergistic interaction with Imperial College and the wider national research environment. Part of achieving this, is to recruit new talent and support postdoctoral scientists to become world leaders in their area of science.
UK Research and Innovation is a new entity that brings together nine partners to create an independent organisation with a strong voice for research and innovation, more information can be found at www.ukri.org
Band

MRC - 4

Location
London
Salary
£41,843 - £43,962 plus London Allowances (£3,913 & £1,472) per annum
Contract Type
Fixed Term
Job Type
Science
Full Time / Part Time
Full Time
Contract Length
3 years
Job Description

KEY SKILLS:

• Background in computer vision
• Experience of biomedical image segmentation and motion tracking – with cardiac imaging being an advantage
• Excellent programming skills in Python / C++ – including use of Jupyter Notebooks and cloud computing resources
• Knowledge of HPC environments, Git and Docker an advantage

EDUCATION / QUALIFICATIONS / TRAINING REQUIRED (WILL BE ASSESSED FROM APPLICATION FORM):

Essential:

• PhD (or equivalent experience) in Computer vision or a closely related discipline
• Significant postdoctoral research experience in cardiac image analysis

KNOWLEDGE AND EXPERIENCE (WILL BE ASSESSED FROM APPLICATION FORM AND AT INTERVIEW):

Essential:

• Excellent skills Python / C++ with proven ability in programming and handling large datasets
• Previous experience of segmenting cardiac MRI datasets and a significant track record of publications and software development
• Experience of supporting and supervising students
• Excellent written communication skills in English

Desirable:

• Experience of motion analysis and image registration
• Working with 3D mesh models derived from imaging
• Experience in writing Bash scripts and using Linux environments
• Familiar with HPC scheduling and using Docker
• Good knowledge of Git for version control
• Experience of managing large databases and data wrangling
• Track record of software development and package creation

PERSONAL SKILLS / BEHAVIOURS / QUALITIES (WILL BE ASSESSED AT THE INTERVIEW):

Essential:

• Ability to conduct reproducible research
• Ability to conduct a detailed review of recent literature
• Ability to develop and apply new concepts
• Creative approach to problem-solving
• Excellent verbal communication skills in English and the ability to deal with a wide range of people
• Ability to direct the work of a small research team and motivate others to produce a high standard of work
• Ability to organise own work with minimal supervision
• Ability to prioritise own work in response to deadlines
• Advanced computer skills, including word-processing, spreadsheets and the Internet
• Willingness to work as part of a team and to be open-minded and cooperative
• Flexible attitude towards work
• Discipline and regard for confidentiality and security at all times
• Willingness to work out of normal working hours (including weekends) if the requirements of the project demand
• Willingness to undertake any necessary training for the role

Further Information
Applicants should submit a CV, a brief cover letter describing scientific interests and names and contacts of two scientific references. Please quote reference number LMS 2473.
The MRC is a unique working environment where scientific researchers and professional support staff can actively partake in world class innovation and collaboration opportunities and their skills and knowledge through accessing a wide catalogue of training & development, including professional registration with the Science Council.
In addition, MRC (part of UKRI) provides its community of employees access to a whole host of useful benefits, including a defined benefit pension scheme and excellent holiday entitlement (30 days plus 2.5 privilege days & 8 bank holidays), family friendly policies (6 months full pay maternity & adoption leave), a range of shopping/travel discounts, access to our Employee Assistant Programme Scheme, Health and Wellbeing Support and a salary sacrifice cycle to work scheme. Please follow this link to find out more - Benefits
Our success is dependent upon our ability to embrace diversity and draw on the skills, understanding and experience of all our people. We warmly invite people from diverse backgrounds and heritage, including people who identify as having a disability, to apply for a role that excites them. As “Disability Confident” employers, we guarantee to interview all applicants who have disclosed they have a disability and who meet the minimum criteria for the vacancy.
UKRI supports research in areas that include animal health, agriculture and food security, and bioscience for health which includes research on animals, genetic modification and stem cell research. Whilst you may not have direct involvement in this type of research, you should consider whether this conflicts with your personal values or beliefs.
We will conduct a full and comprehensive pre-employment check as an essential part of the recruitment process on all individuals that are offered a position with UKRI. This will include a security check and an extreme organisations affiliation check. The role holder will be required to have the appropriate level of security screening/vetting required for the role. UKRI reserves the right to run or re-run security clearance as required during the course of employment

OVERALL PURPOSE:

We are seeking a talented investigator scientist to work on a new collaboration on human aging with Calico Labs. Aging is a key risk factor for cardiovascular disease and recent work has identified several potential mechanisms by which human aging could be attenuated. This is part of a 3-year program using cardiovascular MRI to assess modifiable mechanisms of aging.
Applicants should have an established track record of research in biomedical image analysis including cardiac MRI. We are looking for expertise in computer vision approaches for cardiac image segmentation, motion analysis and registration. Experience of working with state-of-the-art deep learning algorithms is required. Knowledge of how to reconstruct 3D models from sparse image data would be an advantage. Familiarity with UK Biobank data or similar large-scale resources would also be helpful. This will also be an opportunity to innovate and lead on new approaches for building rich image derived cardiac phenotypes and linking these with aging processes. Excellent programming skills in Python / C++ are needed, as well as experience of DL libraries and segmentation pipelines. Previous use of HPC environments would also be an advantage.
The Computational Cardiac Imaging Group works at the intersection of clinical imaging, bioinformatics, computer vision and molecular cardiology to explore the mechanisms underlying heart function. The group uses machine learning to analyse cardiac motion for predicting patient outcomes, discovering potential therapeutic targets and identifying genetic risk factors. We use a flexible and inter-disciplinary approach to research that moves between individuals, populations and model organisms.
The post offers an exciting opportunity to work at the cutting-edge of translational medicine research in a vibrant and supportive multi-disciplinary team that crosses traditional scientific domains. The role involves performing semi-independent research as well as supporting other members of the group. Other responsibilities include leading on lab data management duties and liaising with collaborators on project management. The post holder will have the opportunity to attend scientific conference, and publish the results of their work in leading journals. There will also be an opportunity to contribute to external grant applications. There is a vibrant and supportive scientific community at the LMS with outstanding opportunities for career development and training.

MAIN RESPONSIBILITIES:

• To lead on developing algorithms for large scale cardiac image analysis including motion analysis and novel image derived phenotypes
• To lead on curation and version control of analysis software using Git and Docker
• To collaborate closely with other members of the team and external partners on various projects
• To project manage the image analysis work packages of the program
• To prepare work for publication and grant submissions
• To present at seminars and conferences as necessary
• To co-supervise MSc and PhD students
• Willingness to work out of normal working hours (including weekends) if the requirements of the project demand
• To contribute to the smooth running of the Group’s/Unit’s laboratories and, facilities with other scientists, clinicians, technicians and students within the laboratories
• To train and supervise undergraduate and postgraduate research students, research assistants and postdoctoral scientists as appropriate
• To comply with the Institute, College, Division, and Unit safety practices and to attend courses on safety when appropriate
• Any other duties as may be deemed reasonable by Head of group as well as Head of Division
  Person Specification