Postdoctoral Fellow – Birney Research Group

at  European Molecular Biology Laboratory

Postdoctoral Fellowships
Hinxton, UK
In this job
Your role
You have
You might also have
Why join us
What else you need to know
More about EMBL-EBI
This is an exciting opportunity to get involved in a research project building upon innovative AI approaches to define gene x drug exposure x phenotype relationships at scale over continuous time in large human cohorts. We are looking for a highly motivated bioinformatics expert or data scientist to join this exciting project, and to drive specific aspects of this cutting-edge research, including the analysis of population scale genetic cohorts with electronic healthcare and prescriptions records. You will be based in the Birney research and Open Targets groups at EMBL-EBI and work closely with the Gerstung group at DKFZ.
The Birney research group has several ongoing
You have
Advanced degree (MSc, PhD) in computer science, bioinformatics, software development, or a related field
Strong proficiency in Python and experience with Large Language Model integration
Proven experience in applying modern ML/LLM frameworks and concepts
Good understanding of ML principles including embeddings, cross-validation and fine-tuning
Proficiency in common data preprocessing task and normalisation
Experience with large scale compute infrastructure, including high performance compute facilities (HPC) and / or cloud based workflow managers such as Nextflow
Exposure to source code version control software such as Git and GitHub
Experience in independent problem-solving and examples of resolving complex issues
Fluency in written and spoken English
Ability to effectively communicate ideas or issues and work with team members from multidisciplinary backgrounds
Interest in promoting your work and the ways we have solved complex challenges
You might also have
Experience in MLOps including experiment tracking and model deployment
Experience with current LLM frameworks, such as LangChain and open-source LLM deployment (e.g., llama-cpp, ggml, Xorbits Inference)
Knowledge of human genetics, genomics and/or pharmacogenetics - or are interested in learning about these topics
Experience on working with prescribing data, electronic medical records, large scale cohort biobanks such as UK BioBank
Enthusiasm in novel research and discovery
Why join us
Do something meaningful
At EMBL-EBI you can apply your talent and passion to accelerate science and tackle some of humankind’s greatest challenges. EMBL-EBI, part of the European Molecular Biology Laboratory, is a worldwide leader in the storage, analysis and dissemination of large biological datasets. We provide the global research community with access to publicly available databases and tools which are crucial for the advancement of healthcare, food security, and biodiversity.
Join a culture of innovation
We are located on the Wellcome Genome Campus, alongside other prominent research and biotech organisations, and surrounded by beautiful Cambridgeshire countryside. This is a highly collaborative and inclusive community where our employees enjoy a relaxed atmosphere. We are committed to ensuring our employees feel valued, supported and empowered to reach their professional potential.

Please refer the Job description for details